NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10000569

Scaffold Ga0210406_10000569


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10000569 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49902
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (76.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002273Metagenome / Metatranscriptome576Y
F003591Metagenome / Metatranscriptome478Y
F014653Metagenome / Metatranscriptome261Y
F021622Metagenome / Metatranscriptome218Y
F082467Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_1000056913F021622AGGMPANFSPPGYRWFDLLRHTPARVGMYTGVWLSVILIAWVVIANRVPFLEPLAQQRNVIATLLLAFVATIPVLRFLRSPGELLVSGLFAWSVLTLSYRILSLKFFLLQYYYSTFHIFVLGAVAYLLFATLSWIGMIVWRARAAQGTHTSR
Ga0210406_1000056916F003591N/AMKQVILSILTTLMIVATTLSAMVILVRATLYVTSIESPLPRAGAILAEILLGIVLLLGTVWLATHAAVLIFAPKSDKPEGGPLG
Ga0210406_1000056930F002273N/AMGEAADSGRRMKSGRESKKMGGDVIGLVAVVLTCGIPLALMYTYYRVRKLRSEERLAALARGTEIPMEPELSQFARSRRAGILLVSGGVGFIVMFAMIARVVGEPETLVASAFGILPLAVGLGYFVDAALIHRDLKAS
Ga0210406_1000056948F082467GAGGLGRLKLLLLLVVLLSPAMIFVGLAQDQLIVDASKQPSPPATGRGPYTNSPGHFSRLPIRLELQIPSGSLQPDGTTLIDFVITNRGFDVISLPSSTEEGDRLSSFVLNLWFTSDAVKDAYPKDSAPSRPVKIGIPSLSAELYGRSNDPQSFRWVAPNQNMKVHASSRVQLQPGTHTVTAHAELLRLVLRDSSASWEVVGTADSETITTTLSTPAPTPR
Ga0210406_1000056949F014653GGAGMKKLYAIVLISLLTTAGRADDLATSFKQAAALADAQEKERAAQAYIHLDLKPYYAKKYWPVFQSCLASTDHPDTSPFSFVVAIGKDGRVLRLYIDHETNIFACVRQALQKDEFPHPLVAPHYFHVSMSFAK
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