NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10001363

Scaffold Ga0210406_10001363


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10001363 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29944
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005986Metagenome / Metatranscriptome384Y
F006188Metagenome / Metatranscriptome379Y
F052075Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_1000136326F052075GAGGMNVDLVYSYLIDSTWLFLGSWVVLLLMAGAVAFADWSWPRSSPLMGTMGRN
Ga0210406_1000136327F006188AGGCGGLATTAIPTDLVEVIASEMSVGVERAVECWMSEIEQALTNIHLTSLGRLNAVCEIVEEYKQLTGKTQLKDRSVC
Ga0210406_100013639F005986N/AMRPRITIAALLLGASFLALASKAETLQELIARAESARVEDRPALYVEIAEHQLKSADELYMAGKVDEARTAVQGVVTYSEKAHDAAIQSGKRVKNTEIGFRKMAVKLRDIKRSLNFDDQAPVEAAADRLESLRTELLSHMFGKGK
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