NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10002228

Scaffold Ga0210406_10002228


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10002228 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22507
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001177Metagenome / Metatranscriptome756Y
F011312Metagenome / Metatranscriptome292Y
F075290Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_1000222822F001177AGGAGGMAIKRPTKSKGAPSHKPVATAPLRHVDVRAPQQMVPGEVYVGWLCKNRSCGLVIATAATAPAGKALTDFDDQLTAIKCPHCKDENLYRWSARSEQNYTPKSVST
Ga0210406_1000222827F075290GAGGMASNVALSMDADPIDDIHRRIRRLEAAVFQSEVGLEPVAPSASANQGTSREHTEHTRRNPRQ
Ga0210406_100022288F011312GGAGMKNLNTVSFKLTAFAAALTMNGVVLGALGYLFTLQSHPNMSAISFVKAVVAHQGLS
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