 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021168 Open in IMG/M |
| Scaffold ID | Ga0210406_10016977 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6882 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000688 | Metagenome / Metatranscriptome | 937 | Y |
| F008511 | Metagenome / Metatranscriptome | 332 | Y |
| F016091 | Metagenome / Metatranscriptome | 250 | Y |
| F053492 | Metagenome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210406_100169773 | F000688 | N/A | MAMTHFPQPNVNQRSPRVNLFGSITAAVMAEGGQRARAKLQTISITGGLLQLQHELSTGDFVEIAFHTRSGAIRGMAEMLHPTRKYQSACLQPFRFIALGDDDHRKLRMALDSALDRRFLDPASEQLRTPLGF |
| Ga0210406_100169775 | F008511 | AGGTGG | VSAPAPALAKPPRPRVIVRLADASVAVASLSLIFGLLLVFFPVSFPRIIITSWQRGYLTAVLMVFTLVLDAFLYLRAAYLRSAKPTILVTACLGSLPIIVVGGLSFLMESAVAQTISLDLPNLQARINEEVLAHTYLGLVSAVFLPFLAIRLLQQFKATS |
| Ga0210406_100169776 | F016091 | GGAG | MSLKWPLWIGLYVVMGVLVPWATALSWAHQHGSELRPRPRQLFQRGELGLVGLVVVISVIWNLLQSQFMPQTIALATVLLAVIGTMSGDVWIESYCRQSTGTAWNSERTWRDSRNLAFLVFTMASVVEILLDRFAKVAAL |
| Ga0210406_100169778 | F053492 | AGGAG | MREPGTIFRAIRRAGSASSLRSSRAIISVRVMSGESHHGAKKVGAVIYLATNRPLHLPDFLAEFHQSWPHLLLQKTGKEPHRALFRVGKSDFALELHHVPVPQDVTGPVVHSTLHWPTAGAALAGHQAHLSVVESAENSGVLILACDLTKAIAALLPVTDSLAVCWLNGPALNSSKSFVDTAREMFGIGLYPLSLWVAVRWDAEAGALHTKGMAQFGAPEICVSKQPNVDVLMVDYLFHVAQSVLTLHHSIPDGKTMDSPQGKLKIGKSGAPGRRVLILEPARSG |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |