NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10020071

Scaffold Ga0210406_10020071


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10020071 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6247
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020988Metagenome / Metatranscriptome221Y
F045417Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_100200714F045417AGGGGGMTNTYFATALVGAQSVGLTLRAQNIATAFEVAEHFLQERHPRSEVIVQAVQRITNAFPGHRNRQLDI
Ga0210406_100200716F020988N/AMYGIGLRLVPSVTLATILFMGGLEATLYAQRAAKLSPKVMEVINGPVLELKDDDPPLFRLKKERFNAALKEVKARYDLYNRGLTRIPELIDVGERLFAAEADLYDDPEKKVEALQRQLDVYTEAETNLEKQVKDGLATQADLERLRYDKLSVQINLFKAKNPSTR
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