NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10450858

Scaffold Ga0210406_10450858


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10450858 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000674Metagenome / Metatranscriptome941Y
F000778Metagenome / Metatranscriptome895Y
F015755Metagenome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_104508581F015755N/AMSTEDKPEKPSEESAEWHRARAKSLRKNGFTKMAEEHEQIAQAIERRRQQAK
Ga0210406_104508582F000778AGGMSSDRVIIDAIKMAQRLLWQNLAPTHKLPDATTVMRFRDLVRSPAIQSALERSSDTFAAFTLRALERALADRSRTDREIISWLWDVVDDPHLNQALGFPQNSRIAFGPYPKRR
Ga0210406_104508583F000674GAGMNLRSSIAVTAAMLVAHPTAAQDHRFEADRVVTVRENFVACEVLSQLRRVMDDPRFLLTGECEPLSAGRRVRIYARRGPYVCIYPEDTITPCKWTHEKVLSK
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