NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000028

Scaffold Ga0210400_10000028


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000028 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)269039
Total Scaffold Genes253 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)209 (82.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001920Metagenome / Metatranscriptome617Y
F002886Metagenome / Metatranscriptome523Y
F003584Metagenome / Metatranscriptome478Y
F012370Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_10000028158F002886GGAGGLKTAFRKISRVGSLTGGTKWYLSEDCLLAAKRMMYSVEYRRFYLRDLESIVVLPNRAWLWRMGLVVLLFAGLGLVFWRWVDSTAGAIFGGVGLLWVAVELGLGPTAGARIRATGVSVDLPLVPRTRRAPKVLAKIDAAVRSARDAGSQPTAPGTGAQPAEPILHTGSESPSATVSIPDVPQTHGS
Ga0210400_10000028161F001920GGAGLFDSGSHGGRALNWRGPLLAAGIFAAAFAILLLMAHQNQSTTSDMGSSLREDPYGTSLLFDSYARAGYQVKRSQDEDSLSDQSAGSTTAFFIGGYPYNDWEYGQGKLRNVGKFIGRLEAFLGRGGRIVLIQPAWKLKSESQGWEVENKWNNNPKDSGPTWISPDLREMPAGSEMMYLGADAPWLKTNEHWTVLYAEPTKADAKPDTSGNVYMAIRRVGNGELIAASQEWFLLNETIKTRPNPVLLDFLTGGRPVIWVDETLHGLQQSQGVLWLVQRYRLQVALILFWAALLALLWSMSGNLVRRPRRDQIAQIVRQGEGAGVAARHLLQRSIPADHVVAECWEQYRRRSLHDAEAISADPRFGPRLRAALARPALAGYKELSQLIAERHASAKGLALADSLEPDSSTAEPKIIPKEARIA
Ga0210400_10000028171F003584AGGAGMKPIAFIGTLFAALLLLAAFSAPASAQSNQSGCIAHRPKYIEGIFEVKYDSGCTGHDEPELDPVSSLPGSAKELTWTVVLPTGGTFPVSALGPTFWFGGAVTDPKSLFGQSFVELQFYPDSIVSSCSQSGGFEVKFAPNKYSVCSPVWRLTSTGQKGTFHETAAFNAMLTDGTGPNNPLIMHAGDTVTVHWFTTAAQDGFHVTVNDLTTNGSGTIVLNSSSTGPLMPPFDTQTIGNALGWGAVNDTPNSFVWEIGHESTFTGGGAFCVAGEVGCDTYNAASWTGTSPIQIKSVTFGDGSQAKEFAAVSDLGGKAEILATCSVYGGPYCIYPWYTLGTSGYQFGVDYPDTLKDFGQADQYQQTLLCGGPFGADSTYCDTVLK
Ga0210400_1000002831F012370GAGGMRGKMRRSVWLPILLLSCQATGWAQKGSTGVVDRERERRSFAQVLVKAINAAEADYHKKHDVYANWDTLVGIGDFSSTGTKWAPADFPTVAHALYGNGAEIVPGWRLRLHLSKDGKAYDLLLEDVTDPKCGYAVVTDERGLIRQGKSIDCAV
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