NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000047

Scaffold Ga0210400_10000047


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000047 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)198819
Total Scaffold Genes173 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)143 (82.66%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F000529Metagenome / Metatranscriptome1047Y
F001069Metagenome / Metatranscriptome787Y
F003444Metagenome / Metatranscriptome486Y
F004291Metagenome / Metatranscriptome445Y
F034523Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_10000047129F034523GAGMPNSMKNRWIIAGIAAVSILAGAATAAEHSFNPIKWIKKDPAPTASEQLAKNSDMEKKLTTELQAELPPRTSLKNACEQFKALDDCVAALHVSRNLKIKFNCLKWDVNGTKPAGDVKSCEAPARDRGMSLRTAIRVLKPDADAKNEAKSAERRAKEDIKDASS
Ga0210400_10000047145F000529GAGGMFSAMLFAISIVALTQFALYYWRAVLTGVAAQPVSDRVLAAAHVENGRFNAADFEKLSGLHQLTPDLSPNRGGLGLVRLYYRVIGAVGSLADNRIPALAVWSEQERILCARYAAVQIDRRLQANLALAASLRSC
Ga0210400_1000004724F003444AGGAGMNPHLTLSLAISVTLSTLATPLRAANEPRAGSTEKMTALWTNENLEKLRPLAPISIVGQPNKPDDSTTAAVPRPYLEAQDSEWYAEKAAKLRDELERRKAQLGRYRQAIEGARSLKTITGGINLDEGDIGITPESGIEILQQRVNEAQSQLDALEDLARHNDIPPGTLRGQ
Ga0210400_100000475F004291AGGAGGMNTQRLALLALLGSMLVPVAQAQIKHIEMRVEGMT
Ga0210400_100000476F000092GAGVKQHLGRQSGVQTVEVSLIDGKVEVTPKEDGQIDPAQLLKATYDSGVTAAEMYMTARGKIVKGDSGELALQVKPNQSFALTSNELSKGLEALADTQAMVTVRGQLYKKPAGKKKADLSIPLKLLILEVQKKE
Ga0210400_1000004775F001069AGGAGMQYMPGYTVQCINPDCQARGHWVRADVVGSEFCPSCGDFLRHVPPPLTPHFRMRPRPLAARPPLRPRPR
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