NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000377

Scaffold Ga0210400_10000377


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000377 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50747
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (73.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F006229Metagenome / Metatranscriptome378Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000037737F009917AGGAMGTSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEQQGIHLEEQPMVNYVDLRNGGRHR
Ga0210400_1000037739F007488AGGMKIRAYEESDLEALKAIHARQGFSYAFPDLGNPLFLTKLVLGREEGGKGIAGGALLRLTAEAYLLLDPAAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPEIAAKFGKRLTRLGWVRDDVWTPYCRKLR
Ga0210400_1000037742F084509GGAGGMPSYGNLVPPVSVGFGDSAAVIASTDVVFPAPFKSAQVALAPAFSSGKVRAAVEIVWSGAPGVISVQLQTADTDIDAAYIQEGAAITNVNSGNVTRAEFPDVVAKFARILIATLPNNVTATAKISA
Ga0210400_1000037744F006229GAGGMNKQSDVVSLVNISTQKWPPRNRTYFGSLVIQSPEGGAAYAVTPVRACTSVMDLGDKRSMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAAGPEPTDEELSEARKKLKAFQLRLVETADLEWERSHNMMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIKPGVAVCRTCGAILDREKAAKFGLAEREEKGGEAANVPEKKGTREK
Ga0210400_1000037748F000739AGGAMRASRVEVWLKGLVAAGISGGAGGVMTGLAAVGIDPGHFNLQAGMGATARIGAAAALINAVIGVAAYLQKSPLPGE
Ga0210400_1000037749F000512N/AMIEVIRETHVTPESVARRLCLAGGTNRYGEANYRVVWGWNRLGWIGGKFEDRDARGDLIREVVELRWEPKYPQVNRWHVERWMPAEAYGSPRSWYAQTIERADGKSVAALGPYPDRGEYEHCFTLQGPRGEFVQLTATIAEHVARAIEWGRGRDQASQRAKLYEREAREERAYEEWAFEVMDDGAPAFGGAPMVAAG
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