NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000763

Scaffold Ga0210400_10000763


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000763 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34106
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (82.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F011165Metagenome / Metatranscriptome294Y
F070346Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000076319F070346GGAGMKRVFSATSPGWQRFLCFAACGVFIVMVSVNLPFLFDLMSRGIGWIMALSPHPDESWKGCRWYL
Ga0210400_1000076324F005419AGGAGGMVAAGATETVGQGKGPEAGSSLRGTRKVRTGQPGGVEVQRFFLAKTGGNNGVPEFSKEVPGEPEAMVESLKTGLSYFVVSEWRGVADFSGKKPQLGREAVRSAPKTG
Ga0210400_100007634F011165GAGMQVPWDRFHTAYEEYIEWQGFALWARANVESERCLSARLKAILRKRCPGFVEGTDRSNKPELLGLQLLSWVHSKAFGVARQEGWLDALVFYGFRETRSQGYWAYWEHCEQEWKRRRPTPFPDFPQWRRTALSWNLQGDVICAAAAKAVEEYVDFEAIVYWLRPLFRAPTNELPTHVALELKRECPSLLEFVNTHIPGTKSRRWHRLFNWGKELVLSEAKKEGWLDFVLRQARFHPRHIRLVDYAALWCKSRLGYTTLPYPSLRQWRKDAENYVRGSRERASPT

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