NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10001123

Scaffold Ga0210400_10001123


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10001123 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27195
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005419Metagenome / Metatranscriptome401Y
F011165Metagenome / Metatranscriptome294Y
F026317Metagenome / Metatranscriptome198Y
F034101Metagenome / Metatranscriptome175Y
F070346Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000112310F005419AGGAGGMAAAGATEAVGQGKGPEAVTSLRGTRKMRAGQTNGVEVQRFFLAKTGGSNGVPEFSKEVPGEPEAMVESLKTGLSYFVLSEWQGVADFSGKKPQLGREAVRGAPKTG
Ga0210400_1000112315F070346GGAGMKPLFAMISPRWQRLLEFATWGALIAVICASAPFLFDLVGRGIGWIIGLSPRPEELWKECPWCL
Ga0210400_1000112327F011165GAGMQVPWHRFHKAYEEYIRWQAFVLWARAIVELEGSAPSWLETILRKRCPGFMEEASRLSKPELLGLQVLPWVHNQVFGFAKQEGWLDALVFYGFRDTRSQGYWTYWEHCESEWRKRRPASFPTLVRWRRSALSWKLRGDVSCAAVVKAVEKYLDFEALVYWLRPLFRGAKVLLPPHVALELRQESPSFLEFLRRETSGAYEDKSRSWQRLFDWGKVHVLSHAKKEGWLDCVLRQAGIHPRHVRLVDYSALWCKSRRVNTALPYPHLREWQRDMEGYVRAGRK
Ga0210400_100011236F026317AGCAGGMAFFAQLLELVAVFLPDPLTLGLFTLALFNLLCIAKTLHVAGTLDTDAALRISLAIGYLITIAINILSSGQAPARPAITAVVQSKSNVHQAGRESSPSTVGSQPVGHRDAVIES
Ga0210400_100011237F034101N/AMPVSVSPREIHDWIEESLGQRPNIGLRKAIVNMLFVAPNPFDPRARRNPKTGFLVGTILFAASLGCFCYFNFAR
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