NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10001832

Scaffold Ga0210400_10001832


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10001832 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20671
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F002750Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000183213F000512N/AMISVLREQHDTPERVAQSLELAGGINRFREPNYRAIWGWNRLAWIGGKFEERDPATGSLLREVVELRLEPKYPAVNRWHIEKWLPPEIYGSPRAWWAQTIEVEGGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTATVAEHIARAIEWSRRHPRSAGKRALYDREQRQERAYDAWGYDLLDDAVPAFHRQPFVSVA
Ga0210400_100018326F002750GAGLLRGRYVAMLEEEVARLRAENRALTNSLLGTAGFPPVDYPEQVKPQPLPRLRKRSWHQIQAWKAAEAASNELTK
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