NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210400_10003656

Scaffold Ga0210400_10003656


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10003656 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13566
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004042Metagenome / Metatranscriptome456Y
F040290Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100036566F000092GAGVKQHLGRQSGVQNVEVSLIDGKVEVTPKEDGQIDPAQLLKATYDSGVTPAEMNMTARGKIVKDASGGFALQVAPNQPFVLTPNELSKGLEALADTQTMVTVRGQLYKKPAGKKKADPSASLKLLILEVQKQE
Ga0210400_100036567F004042AGGAGMNTKKLALFALLVSIVSPVSQAQIKHIEMRVEGMT
Ga0210400_100036569F040290AGGMRSVRPIFVAMLAVALAAYALDCGAVTTPEQAIHCCNSMPCSSHGHHGQDCCKTMPTVRAPFVQPSNVHGVSYSPVVLAVLPVVGESHGVVSSSRVIAALCHAPPIRHAPTPLPLRI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.