NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10090506

Scaffold Ga0210400_10090506


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10090506 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2414
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018762Metagenome233Y
F054718Metagenome139Y
F079872Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_100905061F079872GGAGMTTAPFTLEQAQRGKAELGDYTEFYSHLAMQTRRASRVALVACAVALISIASAILAQLRPPVLLRVQDGKVSSLDGPGVQVAQTAAQQQPDSAEKLAFVNTFLNRFVNIDPLTVK
Ga0210400_100905063F018762AGGAMRRHFRTFVVLSFAAAVGLLVPVTARAFIGTMPVIDWTALVRIGQQIGISQDTLNTLGLYVQQYNRVNAGTQEGIGLVRGRQLQGILNQGVGSEFPQFQQLQRDFTTATVDPSTLRGDLEETYGAIPSTDFPISRKKRMDSADATATLGLLESSRAELISQQEELDADDIESRAAMASPAGAAKLSAAANGAMLRSQAYDQRLLARMMRLEALNIARENSLEKEQEQVRQAQLTTVSNMVGGMRLSYGIGDQVGH
Ga0210400_100905064F054718N/AQLGELSRLCQVLHLSEPGAEVVKELRNVSGHFAESYMLVGNQPESSAVIQLTATPFDYWASTSHPLETEFRQKFAKEHPELSALEIIYRLGMAHPKGLASPSSKNQKEIYATAL
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