NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000011

Scaffold Ga0210405_10000011


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000011 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)263401
Total Scaffold Genes212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)174 (82.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F002141Metagenome / Metatranscriptome590Y
F004291Metagenome / Metatranscriptome445Y
F017174Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_10000011141F002141N/AMAVSVEMQHTGDPALQREVAALIEHVLTDRPGDWRVSIVGSQANDGWEMKIVGPNGFERSYTLEGSAGEHRPETIRAILGKMLPGKKA
Ga0210405_10000011182F004291AGGAGGMNTKRLALLVLLGSMVVVPVAEAQIKHIEMRVEGMT
Ga0210405_10000011183F000092GAGVKQHLGRQSGVQKVEVSLLDGKIDVTPKEDGQIDPAQLLKATYDSGVSAAEMDMTARGKIVKDSSGGLALQVEPNRSFTFAPNELSKGLEPLAGTETKVTLRGQLYKKPAGKKKADLSAPLTLLILEVQKKE
Ga0210405_10000011195F017174AGGAGMYSWENPDDRISIAQMNSELQHAQLELLSAHCATHQLRLRFSADDLARFGQRDILRKSVQAAAALSEYYASIEKKIPSAEAASETLLITEDRILEAVGRLSSYLREQREHYIHAAAPLTNHQKALMWPYFSADLLDRVRIVELEGMRIPNPPFYDEYRALGFANLPEVAHMHSLTFLDVIVFNEKIAERTLFHGLVHAVQFELLGLERYSNLFVRSFVNTKLHFSVPLEAHAFSLESKFAGAPANRFSVEDQVRLWAKQARY
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