NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000030

Scaffold Ga0210405_10000030


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000030 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)184821
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (66.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002363Metagenome / Metatranscriptome567Y
F003215Metagenome / Metatranscriptome500Y
F039510Metagenome / Metatranscriptome163Y
F078972Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_10000030157F039510N/AMDGPSVEKIRDELEQLMREHIESMQKQTFLGITPEELRRQKERMQRIREVSAAFLEALKRLPPER
Ga0210405_100000303F078972GGAMAINQSSSDEPHPAAVEKKPYEKPGFRYEQVFVTSALSCGKVDPSQSGCSLNTKLS
Ga0210405_1000003036F002363GGAMNILELCVVVQLCLAFGVAGLIWPEKFRPVFDVLLFPWAASYRAVRANSIAAIALSLLLLARLLIGIH
Ga0210405_1000003071F003215GGAMLRIVQWTMLGSILLYVVIGEVLGTGGRAADPSLSYVFSTASVAIVGVIFVVRRTLVLRSAESLATRPDDALTLRHWKSGYIATYALCEALALFGLIQRFMGFNLQQSLPYYIGGFVLLLFFGPREPVHTGAAAQIPDPPTGGSDN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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