NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000192

Scaffold Ga0210405_10000192


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000192 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87512
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (66.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001500Metagenome / Metatranscriptome682Y
F018819Metagenome / Metatranscriptome233Y
F028918Metagenome / Metatranscriptome190Y
F047269Metagenome / Metatranscriptome150Y
F053414Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000019213F053414GGAGGMHVLRGVLALSLCVSLFAYNLPLYAGGKPLGILTLAYGAHLNASDAFAGLSVFDGESLSTDAEGKLSARIGGSVITLVERSAATLQRSGDGAHIDLDAGAVYVWSAESNPLEVHVEGALLRPHGARQVQAQILMFAPKILQITTRQGSVDFSYGKEFRVLPEGQTYRIYLESEDDPRSAPDAGNDAQKAGMSTATKVAYFIVAGASAGLAAWGIHDLIQSHNGVESPAKP
Ga0210405_1000019222F001500N/AMPNQNPLAGVIPQVVHPKNDGETTISQYVEKIEGEVALDAYVKAQTSAPEVVKRITELENCLQRLANAVLALSEIHKHPELRAAAEEAKLILKNRLEVDDSKHRFHSELGVFKDDLRIIK
Ga0210405_1000019225F018819AGGTGGMNDFSPLPIKDWYALGSLIAEIGFLLAAVWFARNFLRTMRAFQEQLGALLKLSITSAPGERQPTNTTARNVLTEGSPYWLPPSLSASVDPPANPPEVVERGPNLFAAGWQRLVHWLREPMGGSRVSYRRRVMNWLQAPVGH
Ga0210405_1000019248F028918GAGGMPFRPQIRYLAAWLLALVTALLPTAAQPNRDKNTWSYDGGIFLETDGAIPGGACFRVKGHVTAADFFENLKREDTNSGTLFRRGNDLVTEFPKILHLSLSITDTPCDPHMQQTDSRVYLTDEMIRSLRLHFFWKRALELRPLRGVTQSGGEVRPVPWYSHGLEQELPKRFEWLVEFDVPSEGVPLTDNLVLMMYTPEHRLIARGAARM
Ga0210405_1000019264F047269N/AMLSLKEVVDRYSSLAKQWGEPVALEAFALDPEETIKLFTSLDEDYHISRFVNFSFDHGRLYLISGNPSTHIRIDAAIRDLL
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