NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000306

Scaffold Ga0210405_10000306


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000306 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68726
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000552Metagenome / Metatranscriptome1033Y
F000923Metagenome / Metatranscriptome833Y
F062122Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000030629F000923GGAMKTKDNGRKWMWMFLAALVALQTYFVWELLAVFALFAAGFAAIAFVAGSLYMLQRGWVVAVERIADSQHPIMVATRQGFDTLEDAVRRPFRRPGSVHAR
Ga0210405_1000030643F062122AGGMNYLYRSLYILILPRLPRLGPEDVAGTAEYYNRLARRDEAASNPAGAWISRISTRLALRIRPFKTAKKAPQEILGRAA
Ga0210405_100003065F000552GAGGMESMRRKLVWIEEEGFWGWGCSECEWVFRPLGPLLGESLEDMKKHYAEERDKEFAAHVCAKHPRATKNLR
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