NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000902

Scaffold Ga0210405_10000902


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000902 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36589
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (77.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007503Metagenome / Metatranscriptome350Y
F013208Metagenome / Metatranscriptome273Y
F022717Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_1000090214F013208N/AMDVGIRERVEALRREIVEIQKLNLAYLQMTRPDFRAMNDHARRDQRLEEIMGELKSMTDWKKP
Ga0210405_1000090218F007503N/AMLVDSNEGMEYMDKARELLSSLSAAEASNFARFDRERIASRSKALTETIVANSCLLVLTACRFGLIRYHGQVLEQEAAQSRQELSVRDLQLEKLTFALSNQARSKTSAIEANAGLLLQNYGGFLPRQGHEYAEQIKEASAQMEQLRQDLGGSPGSNSDEKAA
Ga0210405_100009026F022717GGAGMENIILSVVGCLMLCASVFPQEQPRELRGGGHLLGETAGQFFSEGFLGDMLRACQGKDWKSVNQLSKNAGNASKTNAKDYCAKEMLAKQQTTSGTRLEYDGRGDAATMRADTFTFDGGHLVKINMVYLAPSANIEGYRPKSFGELFAGLREAYGPPSKSYSEPVLSAYGVKYDAHRAIWMGNQDVISIIEQPDEGGRTEIIAETLAEYNRAAQAPKTANPLR
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