NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10002094

Scaffold Ga0210405_10002094


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10002094 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21180
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F003496Metagenome / Metatranscriptome483Y
F080286Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100020941F003496AGGAGGMPATQPSKELRALCHEHHAEMRLNQSLLNSEDDAKHTLAYACTQPDCLVHYNIYRGYFILSQNGNMNAQDMVPSVRCLRDGTPMYLAETDPEKREFRLWRCPQCDGRRTNEEGLIGLTSQRIQDVSGKNAA
Ga0210405_1000209410F080286AGAAGGVSEHGAFVFSSSCPPVGASLTLKIDLEGIPDEIGRLPVEVDGEVLRVEQCPAERGMMTGGFAVQY
Ga0210405_100020946F000549GAGGVQPQSRKNVVRADRIEGSIVLFRSAARIQRKAERSPRHAEPLWNVVFGAPLFLRTLLRLVFVCLHRHRGPPITLRESIPSSLPGRRSVFSRETHITCLDCGQTFAYNYKSRRLVDFWGVHDPEALAGVRRRVDRFFSPLRDLAVWVGRLNIRILMSQLIRSVHRPGISTKGHSTRSQRPIPGIWVRPSDLKQTNRPKSN
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