NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10009196

Scaffold Ga0210405_10009196


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10009196 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8477
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003278Metagenome / Metatranscriptome496Y
F004875Metagenome / Metatranscriptome420Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100091961F004875AGGAGMTRTFSTLVLAILRAGALISVVLSLSDLGVAQQVVTARATIPFKFWAQDHEFQAGDYVFDNEVPGSAAIHREGTNSAIGVSIILYAVPQEKETARVIFVLRHGKYFLFELWSVQGRYVVTAEFEHRGEASEEQRQVPLTIMESHNQ
Ga0210405_100091969F003278AGGAMLKISLIDSARRRRLILEGKLVAPWTVELRHACEEAKADLRDRELVVEMKHVTTISQEAENVIVDLLNGGIKFRCDGVFAKHVLKQLTRRTNRKLGETTG
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