Basic Information | |
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Taxon OID | 3300021171 Open in IMG/M |
Scaffold ID | Ga0210405_10012977 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6947 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007233 | Metagenome / Metatranscriptome | 355 | Y |
F033134 | Metagenome | 178 | Y |
F037842 | Metagenome / Metatranscriptome | 167 | N |
F044617 | Metagenome / Metatranscriptome | 154 | N |
F065986 | Metagenome | 127 | N |
Protein ID | Family | RBS | Sequence |
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Ga0210405_100129772 | F044617 | AGGA | MNTSPKESRQMPTVTAMTAEERRKLDERIRDRQQKLRNKYPEIYGKVVDWIHDSVEDGTLYICIRFQDKTDFALEFSPQIVRVGTELCDSATGDFDVIRNYYQEERE |
Ga0210405_100129773 | F065986 | GGA | MSNIAKQQGRMIRKGKEVRFGSVHIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCAKISPSLKRFRLISIRTQNRLKV |
Ga0210405_100129775 | F037842 | AGGAGG | LKQKTVKTRGEGVEYPALTGKVIRQVRFVNDEDYTAVTIEFDDSTLVSFRFKASIAFSVDPELSTVKDGNIVRWRELKTRPVMRRVARR |
Ga0210405_100129776 | F033134 | AGGA | MKQGQGSKQLITFSSLHIEVVGPRELRNSQQAIRGVTEFLHGVELDVGKLLRERAEMSPILEGFRLRFG |
Ga0210405_100129777 | F007233 | GGAG | MANRKQREHQRQSNQDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHKLVRKIGLIPDDAPVWRPKD |
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