NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10042757

Scaffold Ga0210405_10042757


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10042757 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3600
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013287Metagenome / Metatranscriptome272N
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100427572F042845GAGMKGETTVNSTPDILTEFKAMVEYLKSSRIDYSIVVQVEADQSERSRTLAMEQPRSRPGTGQLGD
Ga0210405_100427573F046962GGAMEEMANSGYPPETTNQTIPQDTMTDGQLKNLLAELISSSASLNVRVWLDGVYTDIENAGAHREWMKGREVYFKVEGKVDGQNSLEEASLRGV
Ga0210405_100427575F013287GGAGMGLSVKPVRIRDSTYLPVPRDVAELLRVMASKICNVNFRIDEKECTLIYSFAKSVPDLREEPSDPRLVLAE
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