NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10062261

Scaffold Ga0210405_10062261


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10062261 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2944
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003044Metagenome511Y
F004064Metagenome455Y
F047802Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0210405_100622611F047802N/ASVNLATGHVSFDVDGLVLNGGNATGTPGGVDQVEGSLICDAGKADQRIFTTTPVRLNAQNNADFSGTFATIPGTCTNPLFLIRIGPDLPGANQRWIATGAVRSLVGDLEGGK
Ga0210405_100622612F004064N/AMRGAFVVQLGPETRPTEGQFEGWVEEVDSGTELRFRSSDELLKFLGQRFELVLASADKAQAGNRNEQFPCRKKGSPRRKKQS
Ga0210405_100622613F003044AGGAGGVKFGTVVVCSKCKQPIVSGHGYGYICFKIPGKEGYHFFHRRFRTGDCWDDFLRESRGTER
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