NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10000006

Scaffold Ga0210408_10000006


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10000006 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)359301
Total Scaffold Genes369 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)290 (78.59%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015497Metagenome / Metatranscriptome254Y
F022483Metagenome / Metatranscriptome214Y
F026988Metagenome / Metatranscriptome196N
F044086Metagenome / Metatranscriptome155Y
F044088Metagenome / Metatranscriptome155Y
F092494Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_10000006187F092494GAGGMPTRRRKKSPDRPHTPKRLTPEQEDAEREAAFAAIRALFCQVAQPWCSCPRAYCRRHHCCIAEAGPGPCLKRRWPLLTPAEQKQAHSAVIDGGAQRVRPRTHTEWSLRRFPPSNFVH
Ga0210408_10000006225F015497GGAGMGWRACLVAALAMATVEAARAQSVANTITEFGLIGTWATDCTQPAAAGNYLTVYAIKPSGEVSRTYYDEPGHVYNNYKITDAKRQAPDMLWYEQVWDFEGSPANIAGNRVQVLLNMVDDKFQIVSSQGSDGSFFVKDRKFPGSGDESPWQSRCQGR
Ga0210408_10000006249F044086GAGGMSDPMDHFAHPDEDIFVPKYSDENLEAAVGTSPQCFPTFTCSQPMCATGGGCGTWPG
Ga0210408_10000006284F022483AGGAGGMDQPMKKRDFDFHYDGYGVERSLESEQAPDTAGYWFLAAVLFAFIAAGIIVYRAGNAEIQTAANYPNNPAAQSDPVTSPPIVPR
Ga0210408_10000006334F026988N/AMYRRALRKKNRSESIRQSFVVVAVGALLGTGLFAIADYFTAQHWVRPAPAARNGGEIYTGSVLYMPQEGRNCHQMLFDNQTGRFTDNGSVDCENAAYRGVDGNLPKQWSSARARVIADGFRH
Ga0210408_1000000673F044088GGAMTPGEAAAGYRLYAAYCAEIAQTVTDSARKVALLDMAQAWARLAEIADKDSPAEDAPAAM
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