Basic Information | |
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Taxon OID | 3300021178 Open in IMG/M |
Scaffold ID | Ga0210408_10000031 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 209361 |
Total Scaffold Genes | 180 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 137 (76.11%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000092 | Metagenome / Metatranscriptome | 2385 | Y |
F003652 | Metagenome / Metatranscriptome | 475 | Y |
F003681 | Metagenome / Metatranscriptome | 474 | Y |
F004042 | Metagenome / Metatranscriptome | 456 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210408_10000031141 | F004042 | AGGAG | MNFRKLGLLLLLGCVFVPFSQAQIKHIEMRVEGMT |
Ga0210408_10000031142 | F000092 | GAG | VKQHLGRQSGVQAVEVSLIDGKVQITPKEDGRIDPAQLLKATYDSGVSVAEMDLIVRGKVVKDSSGNLALQIAPNQSFAIATNDLSKGVEPLADSSAVVTVLGQLYKKSSGKKKPDPSVPLKLVILEMQKKE |
Ga0210408_1000003185 | F003681 | N/A | MANKTVKIGPAIDAKLYKELVTVARENGQSQRFLLESAIEHYLHNVVPSQRIVRSEVMAAHRRSNEKFRELYQKLAE |
Ga0210408_1000003194 | F003652 | N/A | MSKENDLKVDLLSKTADFYRRSIANYPEFAKQERKPRTKKQLEQRLNTIVEEINSLTGSA |
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