NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10000075

Scaffold Ga0210408_10000075


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10000075 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)155806
Total Scaffold Genes136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)110 (80.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001527Metagenome / Metatranscriptome678Y
F002886Metagenome / Metatranscriptome523Y
F041037Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_10000075135F002886GGAGGVPNTFRKISRVGSLTGGTKWYLSEDCLLAAKRVMYAVEYRRFYLRDLESIVVWPNRLWLLRPIIPAALFVALGLWRVWLRHWEIGALLWRWTDFTAGAIFAGVGLAWALLELALGPTAKARIRTTGATVDLPLVRRTRRARKILSKIDTAVRAARGGVSERPTAPVGATQPAEPAFQTTSETASATAPIEDLT
Ga0210408_1000007515F041037GGAGMNLMKANEDFAGSGRNQHGFSVLEMLLASSILMVGIVSVVQLVPASLNSSVGNRLDTQATVVCQRELDQMLSQPLNVNSFVDSSVDPNNQVISLGGPEAPGAATMMEGDYAVIHFTAFLPPVGYYTYYQDPNDATAPKFELRWAVFPQSNNGVVVSKRVIIACRRVPGAESQQFLLPVNLDSSVQK
Ga0210408_1000007569F001527GGAGMKISVADVLSNQLKPLCSRDNHVMNYEAGGSRSNIGLQASYHCGFEGCSVRYDATDGYYMLIGMPDHANPVDEPGVNTTKCPKHGNWLYRRKNIDREIGIDWCCGVKDCDFGLKKTHVVSTIQSNN
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