NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10000596

Scaffold Ga0210408_10000596


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10000596 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44025
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025793Metagenome / Metatranscriptome200Y
F027915Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_1000059632F027915GGAMASDVQLVVERSSEHPVEYAIVLLVLRDGRWRTVRTFDNAHDPSEHHEHVYVGLEKQSPTVTYGPVNDAMYAAELKLLRDWRDIVHGWEHLQ
Ga0210408_1000059633F025793GGAGMSEITDKTDELFMAASRSDDDLGYPADVAFVPSDEEWTDDVLWRNLINGQATVLVGEDTELLLVPLRRGVIDRLTGRVPVSVAPRTHGHASSYATLSRLGRHPVRQMRDLAHA
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