Basic Information | |
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Taxon OID | 3300021178 Open in IMG/M |
Scaffold ID | Ga0210408_10004874 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11922 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000703 | Metagenome / Metatranscriptome | 928 | Y |
F000781 | Metagenome / Metatranscriptome | 895 | Y |
F002853 | Metagenome / Metatranscriptome | 526 | Y |
F006229 | Metagenome / Metatranscriptome | 378 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210408_100048745 | F002853 | AGGAGG | MGRGAQSQTRQLTDQERANIDALNQQFLGQQQQVGNMLLPQFQSILNNPGLSPADKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNPAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRSNGGGFFSALGSGLGSTLGALPGAFF |
Ga0210408_100048746 | F000703 | N/A | MHIREYQESDLAALRAVHAAQGFDYQLPDLRNPLFVTKLVLFDEDVAPPLRAASVPLNDEAASRDAELKPDATKERILGAAFLRLTAEAYLLLDPKAGTPHERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIVGKFGKRIAHLGWLRDDAWTPYCKKLSEGK |
Ga0210408_100048747 | F000781 | N/A | MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDVSITDPSAARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPITFGAPPAAVPGGGATGPAPLPSSGSGVFPNGVPRGGNGFGVHPGSRITRQTIL |
Ga0210408_100048749 | F006229 | GAGG | MSTETSTAVLVNISTEKWPPRHRTYFGSLEVRSPQPGEAYAITPVRGCTGVIDMGDKRTMPIQITAREIAEDIARELNNDSGEGSFHGVFVAAGPVPTESELADARRRLEEFQHRLVAAADLEWERTKNPMFITDLERRAARQLGLEKPWLYDPKPLAECPVCAEKIKHGVAVCRSCGAILDREKAAQYGLHPQARPRRNVSAIQDGAGKPENEGAREPVGEAKQ |
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