NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10022354

Scaffold Ga0210408_10022354


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10022354 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5042
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004042Metagenome / Metatranscriptome456Y
F040290Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100223542F040290AGGMRSVRPIFVAMLAVALAAYALDCGAVTTPEQAIHCCNSMPCSSHGHHGQDCCKTMPTVRAPFVQPSNVHGVSYSPVVLAVLPVAGESHGVVSSSRVIAALCHAPPIRYAPTPLPLRI
Ga0210408_100223544F004042AGGAGMNMKKLALVALLVSIVSPVSQAQIKHIEMRVEGMT
Ga0210408_100223545F000092GAGVKQHLGRQSGVQNVEVSLIDGKVEVTPKEDGQIDPAQLLRATYDSGVTTAEMNVTARGKIVKDASGGFALQVAPNQSFALTPNELSKGLEALADTQTMATVRGQLYKKPAGKKKADPSASLKLLILEVQKKE
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