NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10038921

Scaffold Ga0210408_10038921


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10038921 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3740
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000476Metagenome / Metatranscriptome1097Y
F023969Metagenome / Metatranscriptome208Y
F090637Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100389212F023969GGAGGMPRSTPRIEVNQRSREARLRLERMERLIVVVMRRRSLLVPRTGSLSAKLRRVLSRSGFVLTALTDLAP
Ga0210408_100389215F090637GAGGMLPKLPYAGEQMASIRMIPIGPITTLNRSILLTERGMSGTGGDDFHCGHCGSVILEDFDPFTVRGNPVYRCGICENNNDLPFAGSERRWSSR
Ga0210408_100389217F000476AGGMAVTETPHPSISALHKQWVKLENEHHELAMAIERAGGTDLTAMRERQVRLLLEIGAVVETIRDAPGTTAEDFIALLDVALEHELDLACDIAFYGPTDYPMTARLLRGLVRKVPGFEFNSLRRWLSLPGKYEELMGE
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