NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10077633

Scaffold Ga0210408_10077633


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10077633 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2602
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000037Metagenome / Metatranscriptome4230Y
F000777Metagenome / Metatranscriptome895Y
F081708Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100776332F081708GGAMPNVPDMFNIEWLETLLATLALISAAVSVHLWHRAAAVPNMPDQPSLTLSWRARLYARAGSAAAATLFFLSLLMISIVIEAMSGTTPPTVAWPPQLN
Ga0210408_100776334F000777GAGGMSDKRRREFITLFGGVAAAWSFAAHAQEPATIGATKAMTATLPQIEIARVKPVDRTPPNLRLSNGLIDLTKGFSLSSSQGIGGAWETPPNIATPGSFAERYGRW
Ga0210408_100776335F000037AGGVADRSFSLMSLLMLKHASASRPSDEWNDDDYDVLADGIIIGRIMKAAAVPVGQSWLWTLGFEYHEDCTATHGYEATREAAMAAFAKSWRQK
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