NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10233131

Scaffold Ga0210408_10233131


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10233131 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1466
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000427Metagenome / Metatranscriptome1151Y
F008916Metagenome / Metatranscriptome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_102331311F000427AGGMTMTNASHPARGRRIKFTPQVIEQIKESVAAGISRDDIANRIGVTVGSLQVTCSRLGISLRRIILSNSSHHTLDVRGRTIPAPGSVGIAHVREQKEVSQLAARAAPVAQFAITMRRHGEGKTTDIPLPSAAIHLLALEAMSRDLDIAGLVSRVLVAAINQDMIHKILR
Ga0210408_102331312F008916GGAGVSDEFDSLDATEKAAVEAALNRCRGLAAQIASELRNKRPEHFVDKLSLADFYASLEHAADVLGQKGRRSVENTSAPVVKGSQARHRQ
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