NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000056

Scaffold Ga0210396_10000056


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000056 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)225890
Total Scaffold Genes202 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)172 (85.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002237Metagenome / Metatranscriptome579Y
F049914Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_10000056201F049914AGGAGMRKKMLARLVVGLMLAGAAWGQAAGDGVVTINGGRNTILMRAPSDPFVPAVTESPKLVKIYSNLGTGSHVYNAIAGVGILGPDAGQPWPESVGCGFRPKADHMVTEIQVGATYVQGTNTLVVSLNENNKGIPGKALHTWRFSNLPTFGSCCTLQSAKYAKGIPVKKGKLYWVVLSPQQKFKDTYDVWNNNFAGTQGTFSNNIGSGWNSSYQVLGAFGVFGK
Ga0210396_1000005621F002237AGGAMSRKVGLAISYFIAIVFTLSILLPSLYCLRHGCRGPGELDAFMPAFALIPFGAIATAFSLRNAIQQIRKRQSWSWVFWPLATIFAIVLVGTIVFIAWVIYETAFHRSFPH
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