NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000092

Scaffold Ga0210396_10000092


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000092 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)162078
Total Scaffold Genes161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)121 (75.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006713Metagenome / Metatranscriptome366Y
F014869Metagenome / Metatranscriptome259Y
F101548Metagenome102N
F103706Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_10000092141F101548AGGAVRKDFRQVQSAGLLMVLLVLLCSCSKRANPPEGPETTLAVDRLVHSGSEESKNVVHGVFPVNKYAQFAFVVPPSRGYSRVHGDFRSFTKRRDPDSTSDKTADVSLMLLNEQEFNDFAQGRPGSTTYQLDPAHDQVVDWQVPITFDRPQEYHLVFSNSDGGPKTKFVKADFTLTFQ
Ga0210396_10000092143F006713N/AMKMFLSNAAAIWNLLLLLAVIGTLAGFFYWFGVRRLIRARRIATSRDRRLLREAAQRESDSNQS
Ga0210396_1000009289F103706AGGAGGMTRLRRNFRSTKSIAGAAFVGFGMFILYENLASAVAWLSNVRGANNFEVLGVLPAFILAVSQVLPAHAANHQHLLQSFLLQHLLVSSWPLLLVLAGTVLSRDDFTDDAKAVQKKDRGAVDLTTGRSTLK
Ga0210396_1000009295F014869N/AMPASAPKRQPDTHLPEHPSSVHHRTPQIYTLEATGLLVIATLILILTLVRYWHHFAWGVR

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