NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000141

Scaffold Ga0210396_10000141


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000141 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)126225
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)101 (78.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015497Metagenome / Metatranscriptome254Y
F026988Metagenome / Metatranscriptome196N
F033555Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0210396_1000014111F015497GGAGMRWRACLVAALAMASVETANAQSVANTIAEFGLIGTWANDCTQPASSSNFLTVYAIKPSGEVSRTYYDQPSHIYNNYKITDAKRQAPDMLSYEQVWDFDGSPANIAGDRVRVLLNMADGKFQIVSSQGSDDSFFVKDRKFPGSADESPWQSRCPAK
Ga0210396_10000141127F026988N/AMYRRALRKKSRSESIRQGFGVVAVGALLGTGLFAIADYFTAQHWVRPAATAARNAGEVYTGSVLYMPQEGRNCHQMLFDNHTGRFTDNGAVDCENAAYRGIDGNQSKQWSSARARVIADGFRQH
Ga0210396_1000014154F033555AGGAMNDATIGLDQIEELPAYEVSDEALEAAAGSEKAGYTLAYCSGLSVCPA
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