NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000839

Scaffold Ga0210396_10000839


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000839 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35634
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (68.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001772Metagenome / Metatranscriptome637Y
F002014Metagenome / Metatranscriptome604Y
F004564Metagenome / Metatranscriptome433Y
F010121Metagenome / Metatranscriptome308Y
F022277Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_1000083911F002014N/AMRKLRIALALGFVFITAACSPRDFLTRRLASDLIVTSDTFKSAQQFFLRTGVISNKDYLSPEYLVLQRRGWITGASSPCPPDVTPPPCWEVALTPIGVDTFHDLIPTGAADAKFFGVPVARRQLTGITGISKTGNAADVDFLWKWVPLNEVGAALYVGGVQYKATVGFRLYDDGWRIIEGSAPKSNQGLDDALKDSEPAP
Ga0210396_1000083914F022277AGGAVAIPQALPARKSKRKHPMLPVLIVLFLVSYGLMCLLAVEQDRTISAQRYLIQSLLGDSSELSNLKGKLIQKHYADAQAQAKAGSRSQAQTPLTQVPSTQAPMTQAPMTQDKPEGNAQSSHNAGKPRKTVPPKPPLGISDIVDGRRIVETI
Ga0210396_1000083917F001772AGGAGGMRKRILFVVGTALLFAAGYLVGNRSAAVAYAETPSRGTVPKSYGRLVTAIADQIGTGLVFEGSDGVIRFVSITGMKEGELARYDQTPTHGGIPKSYGRLVTAVVNSEGTGLIFEDSEGVIRFVTIAGKKEGELTRN
Ga0210396_100008394F004564N/AMEPLKPAQPEASSRGATGLIVAVGVVVILLIALPAYRWFFLISMAIGLVVAGILFLWHKLRPIQEKDIENKRPLGLG
Ga0210396_100008399F010121AGGALWQVSEQRKKSGWLWPLGVVATGLGAAGVVIFRGCWHGKMSWPVRFQDHSYQVCLGCGIKRLFDEQAFRAYGAYSYDLNRLIAADVARTQKTHPEAEPAIHRTAS
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