Scaffold Ga0210396_10001341

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210396_10001341

Scaffold Ga0210396_10001341

Overview

Basic Information
Taxon OID	3300021180 Open in IMG/M
Scaffold ID	Ga0210396_10001341 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	27175
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052774	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210396_1000134125	F052774	GGA	VTEKSASEGGRIKPLAIFSLSLAAIAVALFLYGGKLRRFVRESLMQRVTSAHYEILCPTGAFTQSAMSEFEARREPLFAALDKKLGGADSNKTIRIVFDPQFPMMPADESGQQPYMVIGTTVRTRLNGQIPEIPAAADAEALLRAAWGEPGNGQLARWAAFWLVGEWRGAEIGMAAAQVEQRLGHQKLASLLSDPGDEISSPDDRALLGAAWISEIAEFGGMDAVKKLYAAKMSRPNLAAVTKALGTTPLELDRKWQLWMYAYLAGMPSLPPDSSMPMNMQTGGSH

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