NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10001413

Scaffold Ga0210396_10001413


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10001413 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26152
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000437Metagenome / Metatranscriptome1146Y
F001994Metagenome / Metatranscriptome607Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_1000141328F001994AGGAGGMRAILISVAILFMCCPMPAQQRRQPAPVPRTFVPNEPLPCTAFNSMAARLDAVYKIEEISKAEYDEGMKKYKDGAQPEGVDYFMGDKDKYQRIILQLDKRAEFIRWYAVEGGRAQMAAANTQCNTELGEREGTYAHIDAIRQLQDTLTVSQAEGLLADAALEGQNVVIKAFLQSEAEHRKVVDRYNKLVEGVNTYNKAVNDLVVTVNTAMSEPKGSKLAPTLSFNFIRLQPITCTGSALTITDSTAYMANVRAMAIATDTMHCE
Ga0210396_100014139F000437GAGGLIQKSSQPSRAQWKTKSVLAALALLFFAGGALPLHARAQAVDKKSLWKSVPFAIVKFNDDAPKSWNMYHSEKKGLLLLHLWKRYLLLDVKGEEVFEIDPQTVKPAGDDVEWSLTDKPEQPIETPEWKTRDLVSVERIRFRLGKNGYILELQIPLQANGKPMY
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