NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10022203

Scaffold Ga0210396_10022203


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10022203 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5875
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000885Metagenome / Metatranscriptome849Y
F001619Metagenome / Metatranscriptome662Y
F097722Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_100222031F097722GGAMPSKIYAVLIADVMESRARADLRGLLGKKLAAVSRRHLRQKLIQLPYTVTAGDEFQTVTRSLPSIPAVLQDLRAAL
Ga0210396_100222036F000885GGAGMANAKAVFIGEVTQIAGVAAVVAGVVLSLHHWPAAAALIGGGVAFYIGKKLRAQ
Ga0210396_100222038F001619N/AMLNWLQKILQTKYIGLLEADVARLRAENRALMNSLLGTAGFPPVDFPEAPQAQPLPRLRKRSWHQIQAWRETESNRSTALNSDENAFERLNGPVPRS
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