NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10375797

Scaffold Ga0210396_10375797


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10375797 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1251
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012153Metagenome / Metatranscriptome283Y
F017358Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_103757971F017358GAGMFPETDELSNIISDTIKVVFKRRLVDRVLRLWTEMARGQGFPRLDQIEPSRLGVDWANCFLIA
Ga0210396_103757972F012153AGGMTSLLDGNASRNLSAVVTFKSRDLVMPKGIDGGEMLAWASADELLALHLELASNAKAFWKDGFLLYTLWAMGDFCGMIPPGRRSSHYPYTRTPYTRTGFYQFLRDHGSQISPEEVSRRLKVFRTYNRFGVTIIRMVEKAGLNKSCLAIPYIRDDAINDLLRLCIKTPYHRLRSSLQEAFTRFDRPHKLGSRSKE

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