NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10000275

Scaffold Ga0210388_10000275


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10000275 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44796
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022700Metagenome / Metatranscriptome213Y
F094507Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_1000027523F094507N/AMGENAQMEPIEAQRRSRSNGLCECLVLTLGLYGMVPGNASAGDQPQSTDARSSTDAQKRTRVQIAAPSFPEPFAFAAPRAEAQVFSPTEFRPRKPGLGIATVAGEASVLDAPMLRDTSIASELSEAKTQDRVRLLTLWQNRASSLSLQAGKRGAPSLQWSTPWMHRDAGSRGLFDRLLAVSPHSFAGTVRGATSHQAGATAAKPLDLGTSIDTK
Ga0210388_100002754F022700GAGLGHFHYPRHFGLLGAATVVLFLLSHWDLLSDSLLASFAINGALHALSLSLALRAPQKNLRKAAFIALAAALSVFTMYVGIIGLVLFAAVPGNGRLYMVLGLCSLSGAITYGSLIRIFWIRKFSPRLILGLAFLCLLATSLAFFARAYFPALGGWWLTAVWWFAFSGGLWFFDTHPDALRQPKYNAA
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