NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10002005

Scaffold Ga0210388_10002005


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10002005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15916
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003165Metagenome / Metatranscriptome504Y
F085999Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_1000200514F085999N/AIRTLICVVLALGALLTAPGADASDSDSYFSYLEARVIAHLPLSGGIRRMFLQQEGRRQFLYVQQPFRQGVTVINITKPERPKVVNQVSLENLTMVSFGLAIFETPENSATVGASLATGDAERLHGSGVLKSIRVLDVSDPAHPRTVQNFDGVTSMLEDSAQNLFYVANGDGVWIVSHQQVLRRHECSSSDAISPLPNCD
Ga0210388_100020058F003165AGGAGMAKVIEFYVPKNFRRQLNWAPQLQCGKVIEFCSQTKKSA
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