NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10026124

Scaffold Ga0210388_10026124


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10026124 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4768
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus → Terriglobus roseus DSM 18391(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026323Metagenome / Metatranscriptome198Y
F067999Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_100261245F026323GGAGGMDNQELQNSVARIAETLITTERHLVTVSRSLWAVRISLRELHSDFEEKYLSHFAKPEQAFDAMRDNLLDRGRELADLAHRLRAESSG
Ga0210388_100261248F067999AGGAGMNYDKVQEISAETHTLLNEPTLVITNPVRITLAETPQPEIGAHQARNDRLHELSEELSKLDGRILRAYRFHSAWLIRIVPPHRDISSWISSQWRRGAAVAHAVRIAVTSTRAIETDETRAARAQRTKEEGKEVRAIADKISNYACSVHRRYPSGEVVVGENDLAAQLRKRRDKVGTALNLLLGEQKVKKASLRGYWKLNV

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