NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10247028

Scaffold Ga0210388_10247028


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10247028 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1566
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002363Metagenome / Metatranscriptome567Y
F010868Metagenome / Metatranscriptome298Y
F022542Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_102470282F010868GAGMPTQEESKPEAGRPTAAEHVAAASQLLKALQAKIGEHPEIGEAVNRLEMALASLGVQTGGFL
Ga0210388_102470283F022542N/ALAKAEGRKLKTMDKKEINSPRLTANFLFWICGVGGLLVFALLGHYVWKVF
Ga0210388_102470284F002363GGAMNYLGVCLLIQMSLVFGLAGLLWPDKLMPVFDVLMFPWAASYRTVRINSLAAIGISLVILVKLVAGGV
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