NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10293278

Scaffold Ga0210388_10293278


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10293278 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1429
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001137Metagenome / Metatranscriptome767Y
F069597Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_102932783F069597GGAGMQPEFRFRLNGEIMPEIFIQRALVNSESIGEWQVAVDIDGIGRFTIDDNSQLWDPALPQFVLELRDETSWALLPIPMRHASQDKGWNRVTPQELVEILESAGVITCE
Ga0210388_102932784F001137N/ASLREVGALRERNHELETEMMKVSRIGKREEMDFADEVRTWAGIHISDKLPRNGDYLLAFRDPGGAPVEPRLLIDNKDKAALTEPDIKKLVRDAKERRAPVGIIVTRDETQLRQIDRECRWSQEKGTWILRTTRQWFRRDLDVLRPLLERMRTEGADFLQKNAALSEEVRRTLVDLDEVEKELKKAAKAIDAAAGLTGKYRTRLQVLCDNTITPKKMPQGQQDSGIAQAGD
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