NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196959_10000680

Scaffold Ga0196959_10000680


Overview

Basic Information
Taxon OID3300021184 Open in IMG/M
Scaffold IDGa0196959_10000680 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3860
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006339Metagenome375Y
F020315Metagenome / Metatranscriptome224Y
F057109Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0196959_100006805F006339AGGAGGMQNDQTAQDAKRLLVAMSSNHPEARTASPYGLDRPFSPNWADAEQAGLDRVRRDAAMSWLIENNMLGPVKETENLRDEGKEVPDYDYVYGSVFRITDDGRTLLEEIWERRQH
Ga0196959_100006806F020315GGAGGVDERSLQLLKVMREQVGESTGRTVDAGAAAKSLGMYPETLDRSLLYLVRAGYIEEYADRAMSSRNGMFLITLQGIAAIDNA
Ga0196959_100006807F057109AGGAGGVRENPDSEREEVPGRPAVSPQNTREQAKEGKEQRAEEGRGDLATRLRLFVRRFFGR
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