NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10000001

Scaffold Ga0206682_10000001


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10000001 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)306017
Total Scaffold Genes327 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (23.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017048Metagenome / Metatranscriptome243Y
F064103Metagenome / Metatranscriptome129Y
F067122Metagenome / Metatranscriptome126Y
F070820Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0206682_10000001181F064103N/AMNVFRSVLLSLLVICFLLQVRNFNRYRVDHRRRHDEAVTYLQSDVCVDSVTRAQLGTFNLCEKASHIVDENPSSAAFYDVLNDWYPCGHGRCEGALDWVMANLHWFVMMILVVGMMFYFKWVEHQRDILYTKMRLPTMLRGPVEHVD
Ga0206682_10000001189F070820N/AMSYSSAKRRRIKPFARPTSFDINVAFDIRHFQSIKYGNVINPYFPAVGTDEAFKVLEGEILMQCNKPSVRRYGDHQMHVFSFANGLKGKTGPTLNASSDKVPAKKAVLKTLKYAGVAVTEFTPEKDVFEQGFVLTMGGLNTLFNNGSSILYPGDLICADIPNPVGRGQKKNRALQTGIPHEKLQFVVTPYADLKKELGDAELASRFIMGTALSYSRPGAPVDVVLHKCNVITTGGDFESGESRIAPKVVKAVAKKAKSKK
Ga0206682_10000001246F017048N/AMWYLNVNWIIRVKKNMSNFNYEPSKSSLRADTVVEFVNRSLLDFKINEIPGMGPASIGKFSDHGIYTPAQIVAKFLSYVDSHDTTGQQVCESFYNWANPIMGKANTHNLTFALANYCSEHGLFSLDD
Ga0206682_10000001260F067122N/AMYRSNYKSLFRCHTLTECVNYSLDSSVSKADLFLFLLDTYDILLSHADGSMIFDEDDDLPYLRLAEKLEKYAFVHWHSLFDRIPGQLKGWCEGMFLYVCCSKCRWLASKPGCTVIPSETREWMKEHRLRTHASYDTASWSAGDLLNALDVLEMKWFEFQTIDQHFMIYLNTLEFRAAWFVAHTAPSVIYDIQKHRIKVSEQQFQIHPALLHDFYVRFMGLRRSFAQSIMFDAQPPIKNMPDSRWTEFIEKENRHLSIRKFRDRIADLTWENMARLSDTPRVSYECRGSRVSAYQSVASNRPLSLLDKLNSVCAYSKPPEVHANKFVIEGLHLQMVHAHFMSTYSVNFKNFFFCSSEKSWKHRQTLMTSVVPIILERRRRFDVMHRGLVHLVPTGTFAEAFQLWLLIVRRDYRGILYGSMDFGRLCRMMFDPPEAAQQRQISEGAVAYQWDV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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