Basic Information | |
---|---|
Taxon OID | 3300021185 Open in IMG/M |
Scaffold ID | Ga0206682_10000024 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 125233 |
Total Scaffold Genes | 132 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 84 (63.64%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.6907 | Long. (o) | -122.3448 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017578 | Metagenome / Metatranscriptome | 240 | Y |
F050003 | Metagenome / Metatranscriptome | 146 | Y |
F054027 | Metagenome | 140 | Y |
F077923 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0206682_10000024107 | F050003 | AGGAG | MGRPLKIAKSLTKDIAYNNPGDDVANRTPSGELYYGVVGGDVSLSSITNPITSTRVRPTGGSITAEGEGFIIKQKGASKFLVSRLDASAIDPANAVVGSTVRVVAVGDTDWASMGAGKGTIAVGMIFTVEAASAAGSSGTVAECGICTLANEADSGLSTGSMTVTYTDVGSSLVRLKRFSNRHGISFADAPVLLNFFNILDDTVKIGGSGSSASPATRDLVQVENPDLG |
Ga0206682_1000002427 | F054027 | AGGA | MARISNTKGIKATGGSQFELIMAASGRARSYSADNQPLTPHFNKRGMTALREIEQGLVAYDDIKEMMINKNQTVRPKEETEADSILDI |
Ga0206682_1000002440 | F017578 | AGG | MQALNQITGAMDDIDTILQKHLRNYTQVFRRYTPYDPREWTELLKRVHRDFGRPSERWAWMIDHEWQKQMMEDPEWRGVAVNEWHVIFYFKEESDAVMFGLKY |
Ga0206682_1000002494 | F077923 | N/A | MGLIKFKHNNRTIAIVRNHKCSTTTMLSYVAQALWNADPKEEQFYQNFQNEAPGVYNKARSFEQFESELLAADIRIALWRDPVDKFVSGFYHTMTNPANKNLWIKSPSLTNFLKDIEVYRQNPNVADHCETNTARLGPDRSIYTHIYNYKHVHKIAGILGVPSLDTHHRRDSTMRAGPTELQRLRIRQVMLEDYANGWCESG |
⦗Top⦘ |