NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206682_10000525

Scaffold Ga0206682_10000525


Overview

Basic Information
Taxon OID3300021185 Open in IMG/M
Scaffold IDGa0206682_10000525 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41919
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (96.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025174Metagenome / Metatranscriptome203N
F025619Metagenome / Metatranscriptome201Y
F033361Metagenome / Metatranscriptome177Y
F102852Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0206682_1000052512F025619AGGMKDLEYSMVDVSLAVLSYSKGRWSPEEVLEFAFMLEGFYEEELGEPKPTLVGIKGGKNVSKEPTE
Ga0206682_1000052537F102852AGGAGMRNHIEKTFGFDASLNRAMEDSYYSPQMADELVALQKRIKKSHPFAKFRHTADDALAIHLSPQSMCFDAKVSWDTDAYIVMTVSTRREREISYDDTDKYGIAYSDRRFTSITKTLARATKLIKDTKSATGERVLEKVMQGTIPPFGRGLQQAQEKLDTLQRDVFSSMRNSLTSDALLEYSLAAMEQRPVRADIRHQIEDCTTQYLERKKDLGDSIAACDGLQTLSIYKLKNIDKVFFHYRDTTAGEMQRIKHVDDVNKLPQEVLAKLSVLQATGIDAMETVGYSYDTKVLTSIGCVTRDAYVYDFVEDAMCVYISPETMAEVETLVGY
Ga0206682_1000052545F033361AGGAGMLIKCNAADHLHLIKDDPVRPDLFEGNIKRFEDPFHVYAEVNDETGEIAAVVCVIVCKFVPQDELQIQAVAEGRLTEIEEKLEEREKIYGELGTVLCPYSIWSYQRGHGRKLINNLLEAAAVIHPEVDAVITMSPHTATAMKFHLDNGADIFGTNAECVNYEYEVPDVILH
Ga0206682_1000052546F025174GAGGMSYFTDPMAAIEEAEYIAKEEKRTMCVVEVEPNMIVVVPKKAAVDMGGIILETCVPFEENHNIYD
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